Difference between pages "3.5.3 Minimum reporting guidelines" and "1.4.3.2 Quality in collaborative research"

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== ​​​A. Background & Definitions ==
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​​​​​​​​​=A. Background​​ & Definitions=
The purpose of the different Minimum Information (MI) guidelines is to ensure the data generated using the respective method or technique can be easily verified, analyzed and interpreted by the wider scientific community.
 
Ultimately, MI standards should ensure that information generated by using certain methods should be structured and organised in a way that facilitates data sharing, the verification of results and the re-use of data.
 
  
== B. Guidance & Expectations ==
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Research collaboration, in the context of this Toolbox article, refers to any mode of collaboration between two or more researchers or research organizations where one collaborating party depends on quality of results generated by another collaborating party. The collaboration modes range from a fee-for-service relationships to research projects executed jointly by members of a consortium where each member contributes towards shared goals.
The concept of ‘Minimum Information’ standards was first introduced in 2001 by developing and publishing the MIAME (Minimum Information’ about a microarray experiment) guidelines. Here the authors provided detailed guidance on what information, specifications and meta data about an microarray experiment is crucial and important to be reported - so that any data sets generated can be used to their full potential and readers obtain a comprehensive understanding of the published experiment.
 
  
== C. Resources ==
 
An overview of developed MI guidelines is provided by the FAIRsharing.org website (https://fairsharing.org/) with the possibility to search for specific techniques or methods of interest.
 
  
* [https://doi.org/10.25504/FAIRsharing.8vv5fc Minimum Information About a Proteomics Experiment (MIAPE)]
 
* [https://doi.org/10.25504/FAIRsharing.28yec8 Minimum Information About a Bioinformatics investigation (MIABi)]
 
* [https://doi.org/10.25504/FAIRsharing.my19zk Minimum Information About a RNAi Experiment (MIARE)]
 
* [https://doi.org/10.25504/FAIRsharing.kcnjj2 Minimum Information about Flow Cytometry (MIFlowCyt)]
 
* [https://doi.org/10.25504/FAIRsharing.gt5caz Minimum Information about a Protein Affinity Reagent (MIAPAR)]
 
* [https://doi.org/10.25504/FAIRsharing.c2e4ab Minimum Information about Tissue Imaging (MITI)]
 
* [https://doi.org/10.25504/FAIRsharing.vh2ye1 Minimum Information About Cell Migration Experiment (MIACME)]
 
* [https://doi.org/10.25504/FAIRsharing.5pp7gn Minimum Information about a Neuroscience Investigation (MINI)]
 
* [https://fairsharing.org/4183 Minimum Information Standard for Engineered Organism Experiments (MIEO)]
 
* [https://doi.org/10.25504/FAIRsharing.IjUe3j Minimum Information about Peptide Array Experiment (MIAPepAE)]
 
* [https://doi.org/10.25504/FAIRsharing.ht22t4 Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE)]
 
* [https://doi.org/10.25504/FAIRsharing.wz1w7t Minimum Information About a Spinal Cord Injury experiment (MIASCI)]
 
* [https://doi.org/10.25504/FAIRsharing.jw7rq3 Minimum Information for Reporting Next Generation Sequencing Genotyping (MIRING)]
 
* [https://doi.org/10.25504/FAIRsharing.sbfp9e Minimum Information Required for A Glycomics Experiment - Glycan Microarray Analysis (MIRAGE Glycan Microarray Analysis)]
 
* [https://doi.org/10.25504/FAIRsharing.mxz4jy Minimum Information for Publication of Quantitative Real-Time PCR Experiments (MIQE)]
 
* [https://doi.org/10.25504/FAIRsharing.n7src9 Minimum Information Required for A Glycomics Experiment - Mass Spectrometric Analysis (MIRAGE MS)]
 
* [https://doi.org/10.25504/FAIRsharing.jbg4kp Minimum Information Required for a Drug Metabolism Enzymes and Transporters Experiment (MIDE)]
 
* [https://doi.org/10.25504/FAIRsharing.9mfexc Minimum Information About a Genotyping Experiment (MIGen)]
 
* [https://doi.org/10.25504/FAIRsharing.zj6y9h Minimum Information About a Simulation Experiment (MIASE)]
 
* [https://doi.org/10.25504/FAIRsharing.dt7hn8 Minimum Information About a Bioactive Entity (MIABE)]
 
* [https://doi.org/10.25504/FAIRsharing.32b10v Minimum Information About a Microarray Experiment (MIAME)]
 
* [https://doi.org/10.25504/FAIRsharing.bbb81t Minimum Information about a Stem Cell Experiment (MISCE)]
 
* [https://doi.org/10.25504/FAIRsharing.8z3xzh Minimum Information about a Molecular Interaction Experiment (MIMIx)]
 
* [https://doi.org/10.25504/FAIRsharing.wYScsE Minimum Information about Animal Toxicology Experiments In Vivo (MIATE/invivo)]
 
* [https://doi.org/10.25504/FAIRsharing.x7nef0 Minimum Information Model for Dielectric Measurements of Biological Tissues (MINDER)]
 
* [https://doi.org/10.25504/FAIRsharing.7d0yv9 Minimal Information About a Cellular Assay (MIACA)]
 
* [https://doi.org/10.25504/FAIRsharing.ca48xs Minimal Information About a Phylogenetic Analysis (MIAPA)]
 
* [https://doi.org/10.25504/FAIRsharing.a55z32 Minimal Information about a high throughput SEQuencing Experiment (MINSEQE)]
 
  
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B. Guidan​​ce & Expectations
back to [[Toolbox]]
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It is strongly recommended that:
  
Next item: [[4.1.1 Risk assessment]]​​
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each collaborating party defines research quality expectations prior to entering any formal collaboration agreements and certainly before initiating any experimental work;
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if a collaboration is supported by a formal collaboration agreement, research quality expectations are specified as an attachment to the agreement;
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all factors that can bias the research conduct (e.g. time pressure) are defined and discussed between parties;
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if appropriate, individuals responsible for specific aspects of research quality are explicitly identified.
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Research quality expectations may also include on measurements to ensure data integrity, traceability and security:
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Data generation and documentation practices
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Will raw data be properly handled and stored?
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Do collaborators have laboratory notebooks?
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Data management practices
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Are practices compliant with FAIR and ALCOAplus principles?
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Platform for data sharing with collaborating parties
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Does it support transparent data sharing?
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Is it secure?
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Reporting of results (presentation of research data between collaborating parties)
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Are there any measures necessary to ensure complete reporting including all replicates?
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RISK ASSESSMENT
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Is there any risk that inadequate quality of research practices (e.g. documentation) will endanger intellectual property rights?
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PLEASE DO NOT FORGET
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To check whether research at the collaborating party meet required ethical standards​
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C. Resources[edit]
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Examples and templates for external collaborators:
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1.4.3.1 Expectations for external collaborators.docx
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1.4.3.1 Expectations for external collaborators one pager.docx
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An EQIPD NEED for academia-industry collaborations: The pharma industry partners of EQIPD prepared a specific NEED for academic collaboration partners. This NEED can be downloaded here
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EQIPD external NEED Collaboration with Pharma Industry
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Information on how to use such NEEDs can be found in section 4.3.2 Using the EQIPD applications
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The FAIR Guiding Principles for scientific data management and stewardship​​ [1]
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Webinar on Research Collaborations by Clemence Veauvy:

Revision as of 08:04, 7 February 2024

​​​​​​​​​=A. Background​​ & Definitions=

Research collaboration, in the context of this Toolbox article, refers to any mode of collaboration between two or more researchers or research organizations where one collaborating party depends on quality of results generated by another collaborating party. The collaboration modes range from a fee-for-service relationships to research projects executed jointly by members of a consortium where each member contributes towards shared goals.


B. Guidan​​ce & Expectations It is strongly recommended that:

each collaborating party defines research quality expectations prior to entering any formal collaboration agreements and certainly before initiating any experimental work; if a collaboration is supported by a formal collaboration agreement, research quality expectations are specified as an attachment to the agreement; all factors that can bias the research conduct (e.g. time pressure) are defined and discussed between parties; if appropriate, individuals responsible for specific aspects of research quality are explicitly identified. Research quality expectations may also include on measurements to ensure data integrity, traceability and security:

Data generation and documentation practices Will raw data be properly handled and stored? Do collaborators have laboratory notebooks? Data management practices Are practices compliant with FAIR and ALCOAplus principles? Platform for data sharing with collaborating parties Does it support transparent data sharing? Is it secure? Reporting of results (presentation of research data between collaborating parties) Are there any measures necessary to ensure complete reporting including all replicates?

RISK ASSESSMENT

Is there any risk that inadequate quality of research practices (e.g. documentation) will endanger intellectual property rights?

PLEASE DO NOT FORGET

To check whether research at the collaborating party meet required ethical standards​


C. Resources[edit] Examples and templates for external collaborators:

1.4.3.1 Expectations for external collaborators.docx 1.4.3.1 Expectations for external collaborators one pager.docx An EQIPD NEED for academia-industry collaborations: The pharma industry partners of EQIPD prepared a specific NEED for academic collaboration partners. This NEED can be downloaded here

EQIPD external NEED Collaboration with Pharma Industry Information on how to use such NEEDs can be found in section 4.3.2 Using the EQIPD applications

The FAIR Guiding Principles for scientific data management and stewardship​​ [1]

Webinar on Research Collaborations by Clemence Veauvy: